National Centre for Biological Sciences

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The mandate of NCBS is basic research in the frontier areas of biology. The research interests of the faculty are in the following areas.

1) Biochemistry, Biophysics and Bioinformatics

2) Genetics and Development

3) Cellular Organization and Signaling

4) Neurobiology

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National Centre for Biological Sciences's Articles

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Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer)

Authors: Preethi Ravi, Junhui Jiang, Woei Chang Liew and László Orbán

Citation: Reproductive Biology and Endocrinology 2014 12:5

Content type: Research Published on: 9 January 2014
Loss of IP₃ receptor function in neuropeptide secreting neurons leads to obesity in adult Drosophila

Authors: Manivannan Subramanian, Siddharth Jayakumar, Shlesha Richhariya and Gaiti Hasan

Citation: BMC Neuroscience 2013 14:157

Content type: Research article Published on: 18 December 2013
Structural updates of alignment of protein domains and consequences on evolutionary models of domain superfamilies

Authors: Eshita Mutt, Sudha Sane Rani and Ramanathan Sowdhamini

Citation: BioData Mining 2013 6:20

Content type: Research Published on: 15 November 2013
Tender coconut water an economical growth medium for the production of recombinant proteins in Escherichia coli

Authors: Narendrakumar Sekar, Soumya Kariyadan Veetil and Muniasamy Neerathilingam

Citation: BMC Biotechnology 2013 13:70

Content type: Research article Published on: 2 September 2013
Estimating the fraction of falsely detected spikes in high density microelectrode array recordings based on correlations

Authors: Jens-Oliver Muthmann, Hayder Amin, Alessandro Maccione, Evelyne Sernagor, Luca Berdondini, Matthias H Hennig and Upinder S Bhalla

Citation: BMC Neuroscience 2013 14(Suppl 1):P25

Content type: Poster presentation Published on: 8 July 2013

This article is part of a Supplement: Volume 14 Supplement 1
Vertebrate GAGA factor associated insulator elements demarcate homeotic genes in the HOX clusters

Authors: Surabhi Srivastava, Deepika Puri, Hita Sony Garapati, Jyotsna Dhawan and Rakesh K Mishra

Citation: Epigenetics & Chromatin 2013 6:8

Content type: Research Published on: 22 April 2013
Structural attributes for the recognition of weak and anomalous regions in coiled-coils of myosins and other motor proteins

Authors: Margaret S Sunitha, Anu G Nair, Amol Charya, Kamalakar Jadhav, Sami Mukhopadhyay and Ramanathan Sowdhamini

Citation: BMC Research Notes 2012 5:530

Content type: Technical Note Published on: 25 September 2012
Re-visiting protein-centric two-tier classification of existing DNA-protein complexes

Authors: Sony Malhotra and Ramanathan Sowdhamini

Citation: BMC Bioinformatics 2012 13:165

Content type: Research article Published on: 16 July 2012
Computational Neuroscience Ontology: a new tool to provide semantic meaning to your models

Authors: Yann Le Franc, Andrew P Davison, Padraig Gleeson, Fahim T Imam, Birgit Kriener, Stephen D Larson, Subhasis Ray, Lars Schwabe, Sean Hill and Erik De Schutter

Citation: BMC Neuroscience 2012 13(Suppl 1):P149

Content type: Poster presentation Published on: 16 July 2012

This article is part of a Supplement: Volume 13 Supplement 1
Relationship between amino acid properties and functional parameters in olfactory receptors and discrimination of mutants with enhanced specificity

Authors: M Michael Gromiha, K Harini, R Sowdhamini and Kazuhiko Fukui

Citation: BMC Bioinformatics 2012 13(Suppl 7):S1

Content type: Proceedings Published on: 8 May 2012

This article is part of a Supplement: Volume 13 Supplement 7
Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome

Authors: Khader Shameer and Ramanathan Sowdhamini

Citation: Journal of Clinical Bioinformatics 2012 2:8

Content type: Research Published on: 3 April 2012
Evolutionary traces decode molecular mechanism behind fast pace of myosin XI

Authors: Divya P Syamaladevi and R Sowdhamini

Citation: BMC Structural Biology 2011 11:35

Content type: Research article Published on: 26 September 2011
Connecting MOOSE and NeuroRD through MUSIC: towards a communication framework for multi-scale modeling

Authors: Maya Brandi, Ekaterina Brocke, Husain Ahammad Talukdar, Michael Hanke, Upinder S Bhalla, Jeanette Hellgren Kotaleski and Mikael Djurfeldt

Citation: BMC Neuroscience 2011 12(Suppl 1):P77

Content type: Poster presentation Published on: 18 July 2011

This article is part of a Supplement: Volume 12 Supplement 1
Inferring ion channel densities from spike data

Authors: Oliver Muthmann, Matthias H Hennig and Upinder S Bhalla

Citation: BMC Neuroscience 2011 12(Suppl 1):P12

Content type: Poster presentation Published on: 18 July 2011

This article is part of a Supplement: Volume 12 Supplement 1
Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

Authors: Cristiano C Nunes, Malali Gowda, Joshua Sailsbery, Minfeng Xue, Feng Chen, Douglas E Brown, YeonYee Oh, Thomas K Mitchell and Ralph A Dean

Citation: BMC Genomics 2011 12:288

Content type: Research article Published on: 2 June 2011
Identification and analysis of a glutamatergic local interneuron lineage in the adult Drosophila olfactory system

Authors: Abhijit Das, Albert Chiang, Sejal Davla, Rashi Priya, Heinrich Reichert, K VijayRaghavan and Veronica Rodrigues

Citation: Neural Systems & Circuits 2011 1:4

Content type: Research Published on: 26 January 2011
A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language

Authors: Ronny Herzog, Dominik Schwudke, Kai Schuhmann, Julio L Sampaio, Stefan R Bornstein, Michael Schroeder and Andrej Shevchenko

Citation: Genome Biology 2011 12:R8

Content type: Method Published on: 19 January 2011
PeptideMine - A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes

Authors: Khader Shameer, Lalima L Madan, Shivamurthy Veeranna, Balasubramanian Gopal and Ramanathan Sowdhamini

Citation: BMC Bioinformatics 2010 11:473

Content type: Software Published on: 22 September 2010
Biophysical model of odor representation and processing in the rat olfactory bulb

Authors: Aditya Gilra and Upinder S Bhalla

Citation: BMC Neuroscience 2010 11(Suppl 1):P63

Content type: Poster Presentation Published on: 20 July 2010

This article is part of a Supplement: Volume 11 Supplement 1
Stress-specific response of the p53-Mdm2 feedback loop

Authors: Alexander Hunziker, Mogens H Jensen and Sandeep Krishna

Citation: BMC Systems Biology 2010 4:94

Content type: Research article Published on: 12 July 2010

National Centre for Biological Sciences

National Centre for Biological Sciences's Articles

Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer)

Loss of IP₃ receptor function in neuropeptide secreting neurons leads to obesity in adult Drosophila

Structural updates of alignment of protein domains and consequences on evolutionary models of domain superfamilies

Tender coconut water an economical growth medium for the production of recombinant proteins in Escherichia coli

Estimating the fraction of falsely detected spikes in high density microelectrode array recordings based on correlations

Vertebrate GAGA factor associated insulator elements demarcate homeotic genes in the HOX clusters

Structural attributes for the recognition of weak and anomalous regions in coiled-coils of myosins and other motor proteins

Re-visiting protein-centric two-tier classification of existing DNA-protein complexes

Computational Neuroscience Ontology: a new tool to provide semantic meaning to your models

Relationship between amino acid properties and functional parameters in olfactory receptors and discrimination of mutants with enhanced specificity

Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome

Evolutionary traces decode molecular mechanism behind fast pace of myosin XI

Connecting MOOSE and NeuroRD through MUSIC: towards a communication framework for multi-scale modeling

Inferring ion channel densities from spike data

Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

Identification and analysis of a glutamatergic local interneuron lineage in the adult Drosophila olfactory system

A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language

PeptideMine - A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes

Biophysical model of odor representation and processing in the rat olfactory bulb

Stress-specific response of the p53-Mdm2 feedback loop