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Massachusetts Institute of Technology (MIT)'s Articles

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Improved modeling of RNA-binding protein motifs in an interpretable neural model of RNA splicing

Authors: Kavi Gupta, Chenxi Yang, Kayla McCue, Osbert Bastani, Phillip A. Sharp, Christopher B. Burge and Armando Solar-Lezama

Citation: Genome Biology 2024 25:23

Content type: Method Published on: 16 January 2024
Patient-specific signaling signatures predict optimal therapeutic combinations for triple negative breast cancer

Authors: Heba Alkhatib, Jason Conage-Pough, Sangita Roy Chowdhury, Denen Shian, Deema Zaid, Ariel M. Rubinstein, Amir Sonnenblick, Tamar Peretz-Yablonsky, Avital Granit, Einat Carmon, Ishwar N. Kohale, Judy C. Boughey, Matthew P. Goetz, Liewei Wang, Forest M. White and Nataly Kravchenko-Balasha

Citation: Molecular Cancer 2024 23:17

Content type: Correspondence Published on: 16 January 2024
Electrical stimulation affects the differentiation of transplanted regionally specific human spinal neural progenitor cells (sNPCs) after chronic spinal cord injury

Authors: Nandadevi Patil, Olivia Korenfeld, Rachel N. Scalf, Nicolas Lavoie, Anne Huntemer-Silveira, Guebum Han, Riley Swenson and Ann M. Parr

Citation: Stem Cell Research & Therapy 2023 14:378

Content type: Research Published on: 20 December 2023
Correction: Helicobacter pylori CagA promotes epithelial mesenchymal transition in gastric carcinogenesis via triggering oncogenic YAP pathway

Authors: Nianshuang Li, Yan Feng, Yi Hu, Cong He, Chuan Xie, Yaobin Ouyang, Stephen C. Artim, Deqiang Huang, Yin Zhu, Zhijun Luo, Zhongming Ge and Nonghua Lu

Citation: Journal of Experimental & Clinical Cancer Research 2023 42:305

Content type: Correction Published on: 21 November 2023

The original article was published in Journal of Experimental & Clinical Cancer Research 2018 37:280
Unlocking gut microbiota potential of dairy cows in varied environmental conditions using shotgun metagenomic approach

Authors: Faheem Ahmed Khan, Nuruliarizki Shinta Pandupuspitasari, Chunjie Huang, Windu Negara, Bilal Ahmed, Ezi Masdia Putri, Puji Lestari, Tri Puji Priyatno, Ari Prima, Vita Restitrisnani, Maman Surachman, Sindu Akhadiarto, I Wayan Angga Darmawan, Dimar Sari Wahyuni and Herdis Herdis

Citation: BMC Microbiology 2023 23:344

Content type: Research Published on: 16 November 2023
Loss ratio of the capitation payment unit of the health-promoting entities in Colombia between 2017 and 2021: a financial–actuarial approach

Authors: Oscar Espinosa, Jhonathan Rodríguez, B. Piedad Urdinola, Pedro Luis Do Nascimento Silva, Alejandra Sánchez, Martha-Liliana Arias, Emiliano A. Valdez, Terence Cheng and Sara-Ellison Fisher

Citation: Cost Effectiveness and Resource Allocation 2023 21:73

Content type: Research Published on: 4 October 2023
Expansion of human bone marrow-derived mesenchymal stromal cells with enhanced immunomodulatory properties

Authors: Shu Hui Neo, Zhisheng Her, Rashidah Othman, Ching Ann Tee, Li Ching Ong, Yuehua Wang, Irwin Tan, Jaylen Tan, Yanmeng Yang, Zheng Yang, Qingfeng Chen and Laurie A. Boyer

Citation: Stem Cell Research & Therapy 2023 14:259

Content type: Research Published on: 19 September 2023
Financing repurposed drugs for rare diseases: a case study of Unravel Biosciences

Authors: Bechara Abouarab, Christian Bazarian, Zied Ben Chaouch, Andrew W. Lo, Guillermo Mourenza Gonzalez, Richard Novak and Frederic Vigneault

Citation: Orphanet Journal of Rare Diseases 2023 18:287

Content type: Research Published on: 12 September 2023
SCA: recovering single-cell heterogeneity through information-based dimensionality reduction

Authors: Benjamin DeMeo and Bonnie Berger

Citation: Genome Biology 2023 24:195

Content type: Method Published on: 25 August 2023

The Protocol to this article has been published in Nature Protocols 2024 19:s41596-024-00991-3
Fairness and generalizability of OCT normative databases: a comparative analysis

Authors: Luis Filipe Nakayama, Lucas Zago Ribeiro, Juliana Angelica Estevão de Oliveira, João Carlos Ramos Gonçalves de Matos, William Greig Mitchell, Fernando Korn Malerbi, Leo Anthony Celi and Caio Vinicius Saito Regatieri

Citation: International Journal of Retina and Vitreous 2023 9:48

Content type: Original article Published on: 21 August 2023
A topology-marginal composite likelihood via a generalized phylogenetic pruning algorithm

Authors: Seong-Hwan Jun, Hassan Nasif, Chris Jennings-Shaffer, David H Rich, Anna Kooperberg, Mathieu Fourment, Cheng Zhang, Marc A Suchard and Frederick A Matsen IV

Citation: Algorithms for Molecular Biology 2023 18:10

Content type: Research Published on: 31 July 2023
In-silico molecular designs to treat neurologic and ophthalmologic diseases caused by sorbitol excess: engineering the Agrobacterium vitis protein

Authors: Shonit Nair Sharma, Ashkhan Hojati, Bhargavee Gnanasambandam, Rahul S. Yerrabelli and Joshua Brozek

Citation: BMC Research Notes 2023 16:129

Content type: Research Note Published on: 3 July 2023
kboolnet: a toolkit for the verification, validation, and visualization of reaction-contingency (rxncon) models

Authors: Willow Carretero Chavez, Marcus Krantz, Edda Klipp and Irina Kufareva

Citation: BMC Bioinformatics 2023 24:246

Content type: Software Published on: 12 June 2023
A comparison of point-tracking algorithms in ultrasound videos from the upper limb

Authors: Uriel Magana-Salgado, Praneeth Namburi, Micha Feigin-Almon, Roger Pallares-Lopez and Brian Anthony

Citation: BioMedical Engineering OnLine 2023 22:52

Content type: Research Published on: 24 May 2023
Transcriptional diversity in specific synaptic gene sets discriminates cortical neuronal identity

Authors: Amparo Roig Adam, José A. Martínez-López, Sophie J. F. van der Spek, Patrick F. Sullivan, August B. Smit, Matthijs Verhage and Jens Hjerling-Leffler

Citation: Biology Direct 2023 18:22

Content type: Research Published on: 9 May 2023
Correction: Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly

Authors: Arianna I. Krinos, Natalie R. Cohen, Michael J. Follows and Harriet Alexander

Citation: BMC Bioinformatics 2023 24:185

Content type: Correction Published on: 5 May 2023

The original article was published in BMC Bioinformatics 2023 24:74
In-Vivo fluorescent nanosensor implants based on hydrogel-encapsulation: investigating the inflammation and the foreign-body response

Authors: Michael A. Lee, Xiaojia Jin, Sureshkumar Muthupalani, Naveed A. Bakh, Xun Gong and Michael S. Strano

Citation: Journal of Nanobiotechnology 2023 21:133

Content type: Research Published on: 24 April 2023
Author Correction: Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom

Authors: Srijak Bhatnagar, Elise S. Cowley, Sebastian H. Kopf, Sherlynette Pérez Castro, Sean Kearney, Scott C. Dawson, Kurt Hanselmann and S. Emil Ruff

Citation: Environmental Microbiome 2023 18:27

Content type: Correction Published on: 30 March 2023

The original article was published in Environmental Microbiome 2020 15:3
Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly

Authors: Arianna I. Krinos, Natalie R. Cohen, Michael J. Follows and Harriet Alexander

Citation: BMC Bioinformatics 2023 24:74

Content type: Research Published on: 3 March 2023

The Correction to this article has been published in BMC Bioinformatics 2023 24:185
Draft genomes of three closely related low light-adapted Prochlorococcus

Authors: Jessie W. Berta-Thompson, Elaina Thomas, Andrés Cubillos-Ruiz, Thomas Hackl, Jamie W. Becker, Allison Coe, Steven J. Biller, Paul M. Berube and Sallie W. Chisholm

Citation: BMC Genomic Data 2023 24:11

Content type: Data Note Published on: 24 February 2023

Massachusetts Institute of Technology (MIT)

Massachusetts Institute of Technology (MIT)'s Articles

Improved modeling of RNA-binding protein motifs in an interpretable neural model of RNA splicing

Patient-specific signaling signatures predict optimal therapeutic combinations for triple negative breast cancer

Electrical stimulation affects the differentiation of transplanted regionally specific human spinal neural progenitor cells (sNPCs) after chronic spinal cord injury

Correction: Helicobacter pylori CagA promotes epithelial mesenchymal transition in gastric carcinogenesis via triggering oncogenic YAP pathway

Unlocking gut microbiota potential of dairy cows in varied environmental conditions using shotgun metagenomic approach

Loss ratio of the capitation payment unit of the health-promoting entities in Colombia between 2017 and 2021: a financial–actuarial approach

Expansion of human bone marrow-derived mesenchymal stromal cells with enhanced immunomodulatory properties

Financing repurposed drugs for rare diseases: a case study of Unravel Biosciences

SCA: recovering single-cell heterogeneity through information-based dimensionality reduction

Fairness and generalizability of OCT normative databases: a comparative analysis

A topology-marginal composite likelihood via a generalized phylogenetic pruning algorithm

In-silico molecular designs to treat neurologic and ophthalmologic diseases caused by sorbitol excess: engineering the Agrobacterium vitis protein

kboolnet: a toolkit for the verification, validation, and visualization of reaction-contingency (rxncon) models

A comparison of point-tracking algorithms in ultrasound videos from the upper limb

Transcriptional diversity in specific synaptic gene sets discriminates cortical neuronal identity

Correction: Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly

In-Vivo fluorescent nanosensor implants based on hydrogel-encapsulation: investigating the inflammation and the foreign-body response

Author Correction: Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom

Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly

Draft genomes of three closely related low light-adapted Prochlorococcus