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Benchmark of cellular deconvolution methods using a multi-assay dataset from postmortem human prefrontal cortex

Authors: Louise A. Huuki-Myers, Kelsey D. Montgomery, Sang Ho Kwon, Sophia Cinquemani, Nicholas J. Eagles, Daianna Gonzalez-Padilla, Sean K. Maden, Joel E. Kleinman, Thomas M. Hyde, Stephanie C. Hicks, Kristen R. Maynard and Leonardo Collado-Torres

Citation: Genome Biology 2025 26:88

Content type: Method Published on: 7 April 2025

A Related Article has been published.
Missing cell types in single-cell references impact deconvolution of bulk data but are detectable

Authors: Adriana Ivich, Natalie R. Davidson, Laurie Grieshober, Weishan Li, Stephanie C. Hicks, Jennifer A. Doherty and Casey S. Greene

Citation: Genome Biology 2025 26:86

Content type: Research Published on: 7 April 2025
Association between antepartum depressive symptoms and prenatal care utilization and milestones: a retrospective cohort study

Authors: Minyoung Jang, Malini Ramaiyer, Sarah Olson, Kristin Voegtline and Cybill Esguerra

Citation: BMC Pregnancy and Childbirth 2025 25:392

Content type: Research Published on: 3 April 2025
Advocating for collaboration among key partners to promote diversity in clinical studies amid policy challenges in the United States of America

Authors: Samuel Byiringiro, Juliana K. Garcia, Nsenga Farrell, Bunmi Ogungbe, Rifath Ara Alam Barsha, Hailey N. Miller, Evans Whitaker, Paul Wang, William E. Rosa, Barbara E. Bierer, Cheryl R. Himmelfarb, Erin D. Michos, Koen De Lombaert, Maya Berdichesky, Stephan Busque, Latha Palaniappan…

Citation: Trials 2025 26:117

Content type: Commentary Published on: 2 April 2025
Higher levels of VEGF-A and TNFα in patients with immune checkpoint inhibitor-induced inflammatory arthritis

Authors: Elise F. Gray-Gaillard, Ami A. Shah, Clifton O. Bingham III, Jennifer H. Elisseeff, Joseph Murray, Julie Brahmer, Patrick Forde, Valsamo Anagnostou, Jennifer Mammen and Laura C. Cappelli

Citation: Arthritis Research & Therapy 2025 27:74

Content type: Research Published on: 1 April 2025
Role of introvert and extrovert personalities in perception of COVID-19’s impact, psychological state, knowledge, infection, and preparedness preferences

Authors: Jiaying Li, Daniel Yee Tak Fong, Mandy Man Ho, Edmond Pui Hang Choi, Kris Yuet Wan Lok, Jung Jae Lee, WenJie Duan, Janet Yuen Ha Wong and Chia-Chin Lin

Citation: BMC Public Health 2025 25:1203

Content type: Research Published on: 31 March 2025
Genotype inference from aggregated chromatin accessibility data reveals genetic regulatory mechanisms

Authors: Brandon M. Wenz, Yuan He, Nae-Chyun Chen, Joseph K. Pickrell, Jeremiah H. Li, Max F. Dudek, Taibo Li, Rebecca Keener, Benjamin F. Voight, Christopher D. Brown and Alexis Battle

Citation: Genome Biology 2025 26:81

Content type: Research Published on: 30 March 2025
Cognitive Level Enhancement through Vision Exams and Refraction (CLEVER): study protocol for a randomised controlled trial

Authors: Srinivas Marmamula, Suvarna Alladi, Keerthana Umapathy, Ving Fai Chan, Graeme MacKenzie, Lynne Lohfeld, Asha Latha Mettla, Sridevi Rayasam, Vijaya K. Gothwal, Raja Narayanan, Giridhar Pyda, Harithaa P. Chadalavada, Priya Thomas, Lovemore Nyasha Sigwadhi, Augusto Azuara-Blanco, Cliona McDowell…

Citation: Trials 2025 26:109

Content type: Methodology Published on: 28 March 2025
DNA methylation memory of pancreatic acinar-ductal metaplasia transition state altering Kras-downstream PI3K and Rho GTPase signaling in the absence of Kras mutation

Authors: Emily K.W. Lo, Adrian Idrizi, Rakel Tryggvadottir, Weiqiang Zhou, Wenpin Hou, Hongkai Ji, Patrick Cahan and Andrew P. Feinberg

Citation: Genome Medicine 2025 17:32

Content type: Research Published on: 28 March 2025
Prevalence and characteristics of acute ischemic stroke and intracranial hemorrhage in patients with immune thrombocytopenic purpura and immune thrombotic thrombocytopenic purpura: a systematic review and meta-analysis

Authors: Syed Ameen Ahmad, Olivia Liu, Amy Feng, Andrew Kalra, Apurva Dev, Marcus Spann, Aaron M. Gusdon, Shruti Chaturvedi and Sung-Min Cho

Citation: Neurological Research and Practice 2025 7:19

Content type: Research article Published on: 17 March 2025
A genome-wide association study of methamphetamine use among people with HIV

Authors: A. Venkataraman, T. Jia, S. A. Ruderman, C. B. Haas, R. M. Nance, L. S. Mixson, K. H. Mayer, M S Saag, G. Chander, R. D. Moore, J. Jacobson, S. Napravnik, K. Christopolous, W. J. Lee, B. M. Whitney, I. Peter…

Citation: BMC Medical Genomics 2025 18:46

Content type: Research Published on: 11 March 2025
Quantifying the burden of hereditary hemorrhagic telangiectasia on quality of life and psychological health: a cross-sectional study

Authors: Anna J. Gong, Marisabel Linares Bolsegui, Emerson E. Lee, Matthew R. Tan, Yong Zeng, Jianqiao Ma, Prateek C. Gowda, Tushar Garg and Clifford R. Weiss

Citation: Orphanet Journal of Rare Diseases 2025 20:109

Content type: Research Published on: 7 March 2025
A survey weighted analysis of HPTN 071 (PopART) primary outcome of HIV incidence

Authors: Timothy M. Skalland, Jean de Dieu Tapsoba, Sahar Z. Zangeneh, Sian Floyd, Helen Ayles, Peter Bock, Sarah Fidler, Susan H. Eshleman, Richard J. Hayes and Deborah Donnell

Citation: AIDS Research and Therapy 2025 22:30

Content type: Brief Report Published on: 7 March 2025
Engineered multifunctional nanoparticles for enhanced radiation therapy: three-in-one approach for cancer treatment

Authors: Tejaswini Appidi, Debarghya China, George-Răzvan Ștefan, Michele Moreau, Serena Mao, Esteban Velarde, Ngeh Toyang, Henry Lowe, Aravind Kumar Rengan, Kai Ding and Wilfred Ngwa

Citation: Molecular Cancer 2025 24:68

Content type: Research Published on: 6 March 2025
The circular RNA circbabo(5,6,7,8S) regulates lipid metabolism and neuronal integrity via TGF-β/ROS/JNK/SREBP signaling axis in Drosophila

Authors: Jie Sheng, Xuemei Zhang, Weihong Liang, Junfang Lyu, Bei Zhang, Jie Min, Austin Xu, Xingyu Xu, Jennifer W. Li, Jian-Liang Li, Rui Zhou and Wei Liu

Citation: BMC Biology 2025 23:69

Content type: Research Published on: 5 March 2025
Navigating CDC recognition for the National DPP in socially vulnerable communities: barriers, facilitators, and recommendations

Authors: Taynara Formagini, Ariba Rezwan, Daphnee Rodriguez, Maya Venkataramani, Matthew James O’Brien, Elva Arredondo and Boon Peng Ng

Citation: Archives of Public Health 2025 83:57

Content type: Research Published on: 3 March 2025
A United States HIV provider survey of antiretroviral therapy management in people living with HIV with co-occurring conditions

Authors: Sonya Krishnan, Marina B. Martinez Rivera, Christopher K. Lippincott and Maunank Shah

Citation: AIDS Research and Therapy 2025 22:27

Content type: Brief Communication Published on: 1 March 2025
Perspectives of syringe services program operators in Michigan on their relationship with substance use treatment: a qualitative study

Authors: Molly C. Reid, Samantha J. Harris, Suzanne M. Grieb, Sabrina Gattine, Zekiye Lukco, Brandon Hool, Mary Aguirre, Fernanda Alonso Aranda, Catherine Tomko, Sara Whaley, Brendan Saloner and Sean T. Allen

Citation: Harm Reduction Journal 2025 22:25

Content type: Research Published on: 1 March 2025
Mem-based pangenome indexing for k-mer queries

Authors: Stephen Hwang, Nathaniel K. Brown, Omar Y. Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz and Ben Langmead

Citation: Algorithms for Molecular Biology 2025 20:3

Content type: Research Published on: 1 March 2025
The gender gap in academic surgery: the electronic health record

Authors: Sarah Y. Bessen, Sean Tackett, Carolyn M. Jenks, C. Matthew Stewart, Maria Oliva-Hemker and Jennifer K. Lee

Citation: BMC Surgery 2025 25:84

Content type: Research Published on: 28 February 2025