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Broad Institute of MIT & Harvard 's Articles

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Page 14 of 14

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

Authors: Daniel Aird, Michael G Ross, Wei-Sheng Chen, Maxwell Danielsson, Timothy Fennell, Carsten Russ, David B Jaffe, Chad Nusbaum and Andreas Gnirke

Citation: Genome Biology 2011 12:R18

Content type: Method Published on: 21 February 2011
Next-generation sequencing for HLA typing of class I loci

Authors: Rachel L Erlich, Xiaoming Jia, Scott Anderson, Eric Banks, Xiaojiang Gao, Mary Carrington, Namrata Gupta, Mark A DePristo, Matthew R Henn, Niall J Lennon and Paul IW de Bakker

Citation: BMC Genomics 2011 12:42

Content type: Methodology article Published on: 18 January 2011
A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries

Authors: Sheila Fisher, Andrew Barry, Justin Abreu, Brian Minie, Jillian Nolan, Toni M Delorey, Geneva Young, Timothy J Fennell, Alexander Allen, Lauren Ambrogio, Aaron M Berlin, Brendan Blumenstiel, Kristian Cibulskis, Dennis Friedrich, Ryan Johnson, Frank Juhn…

Citation: Genome Biology 2011 12:R1

Content type: Method Published on: 4 January 2011
Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus)

Authors: Lucile Soler, Matthew A Conte, Takayuki Katagiri, Aimee E Howe, Bo-Young Lee, Chris Amemiya, Andrew Stuart, Carole Dossat, Julie Poulain, Jeremy Johnson, Federica Di Palma, Kerstin Lindblad-Toh, Jean-Francois Baroiller, Helena D'Cotta, Catherine Ozouf-Costaz and Thomas D Kocher

Citation: BMC Genomics 2010 11:636

Content type: Research article Published on: 16 November 2010
Identification of small RNAs in Francisella tularensis

Authors: Guillaume Postic, Eric Frapy, Marion Dupuis, Iharilalao Dubail, Jonathan Livny, Alain Charbit and Karin L Meibom

Citation: BMC Genomics 2010 11:625

Content type: Research article Published on: 10 November 2010
A novel totivirus and piscine reovirus (PRV) in Atlantic salmon (Salmo salar) with cardiomyopathy syndrome (CMS)

Authors: Marie Løvoll, Jannicke Wiik-Nielsen, Søren Grove, Christer R Wiik-Nielsen, Anja B Kristoffersen, Randi Faller, Trygve Poppe, Joonil Jung, Chandra S Pedamallu, Alexander J Nederbragt, Matthew Meyerson, Espen Rimstad and Torstein Tengs

Citation: Virology Journal 2010 7:309

Content type: Research Published on: 10 November 2010
Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species

Authors: Moran Yassour, Jenna Pfiffner, Joshua Z Levin, Xian Adiconis, Andreas Gnirke, Chad Nusbaum, Dawn-Anne Thompson, Nir Friedman and Aviv Regev

Citation: Genome Biology 2010 11:R87

Content type: Research Published on: 26 August 2010
Whole proteomes as internal standards in quantitative proteomics

Authors: Shao-En Ong

Citation: Genome Medicine 2010 2:49

Content type: Commentary Published on: 30 July 2010
Screensaver: an open source lab information management system (LIMS) for high throughput screening facilities

Authors: Andrew N Tolopko, John P Sullivan, Sean D Erickson, David Wrobel, Su L Chiang, Katrina Rudnicki, Stewart Rudnicki, Jennifer Nale, Laura M Selfors, Dara Greenhouse, Jeremy L Muhlich and Caroline E Shamu

Citation: BMC Bioinformatics 2010 11:260

Content type: Software Published on: 18 May 2010
Systematic discovery of regulatory motifs in Fusarium graminearum by comparing four Fusarium genomes

Authors: Lokesh Kumar, Andrew Breakspear, Corby Kistler, Li-Jun Ma and Xiaohui Xie

Citation: BMC Genomics 2010 11:208

Content type: Research article Published on: 26 March 2010
A meta-analysis of genome-wide data from five European isolates reveals an association of COL22A1, SYT1, and GABRR2with serum creatinine level

Authors: Cristian Pattaro, Alessandro De Grandi, Veronique Vitart, Caroline Hayward, Andre Franke, Yurii S Aulchenko, Asa Johansson, Sarah H Wild, Scott A Melville, Aaron Isaacs, Ozren Polasek, David Ellinghaus, Ivana Kolcic, Ute Nöthlings, Lina Zgaga, Tatijana Zemunik…

Citation: BMC Medical Genetics 2010 11:41

Content type: Research article Published on: 11 March 2010
A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454

Authors: Niall J Lennon, Robert E Lintner, Scott Anderson, Pablo Alvarez, Andrew Barry, William Brockman, Riza Daza, Rachel L Erlich, Georgia Giannoukos, Lisa Green, Andrew Hollinger, Cindi A Hoover, David B Jaffe, Frank Juhn, Danielle McCarthy, Danielle Perrin…

Citation: Genome Biology 2010 11:R15

Content type: Method Published on: 5 February 2010
Family-based genetic risk prediction of multifactorial disease

Authors: Douglas M Ruderfer, Joshua Korn and Shaun M Purcell

Citation: Genome Medicine 2010 2:2

Content type: Method Published on: 15 January 2010
A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data

Authors: Desmond S Lun, Ashley Sherrid, Brian Weiner, David R Sherman and James E Galagan

Citation: Genome Biology 2009 10:R142

Content type: Method Published on: 22 December 2009
Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts

Authors: Joshua Z Levin, Michael F Berger, Xian Adiconis, Peter Rogov, Alexandre Melnikov, Timothy Fennell, Chad Nusbaum, Levi A Garraway and Andreas Gnirke

Citation: Genome Biology 2009 10:R115

Content type: Method Published on: 16 October 2009
ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

Authors: Iain MacCallum, Dariusz Przybylski, Sante Gnerre, Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance P Shea, Louise Williams, Sarah Young, Chad Nusbaum and David B Jaffe

Citation: Genome Biology 2009 10:R103

Content type: Method Published on: 1 October 2009
Disparities in allele frequencies and population differentiation for 101 disease-associated single nucleotide polymorphisms between Puerto Ricans and non-Hispanic whites

Authors: Josiemer Mattei, Laurence D Parnell, Chao-Qiang Lai, Bibiana Garcia-Bailo, Xian Adiconis, Jian Shen, Donna Arnett, Serkalem Demissie, Katherine L Tucker and Jose M Ordovas

Citation: BMC Genetics 2009 10:45

Content type: Research article Published on: 14 August 2009

Broad Institute of MIT & Harvard

Broad Institute of MIT & Harvard 's Articles

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

Next-generation sequencing for HLA typing of class I loci

A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries

Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus)

Identification of small RNAs in Francisella tularensis

A novel totivirus and piscine reovirus (PRV) in Atlantic salmon (Salmo salar) with cardiomyopathy syndrome (CMS)

Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species

Whole proteomes as internal standards in quantitative proteomics

Screensaver: an open source lab information management system (LIMS) for high throughput screening facilities

Systematic discovery of regulatory motifs in Fusarium graminearum by comparing four Fusarium genomes

A meta-analysis of genome-wide data from five European isolates reveals an association of COL22A1, SYT1, and GABRR2with serum creatinine level

A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454

Family-based genetic risk prediction of multifactorial disease

A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data

Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts

ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

Disparities in allele frequencies and population differentiation for 101 disease-associated single nucleotide polymorphisms between Puerto Ricans and non-Hispanic whites