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Page 5 of 14

Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms

Authors: Maura Costello, Mark Fleharty, Justin Abreu, Yossi Farjoun, Steven Ferriera, Laurie Holmes, Brian Granger, Lisa Green, Tom Howd, Tamara Mason, Gina Vicente, Michael Dasilva, Wendy Brodeur, Timothy DeSmet, Sheila Dodge, Niall J. Lennon…

Citation: BMC Genomics 2018 19:332

Content type: Research article Published on: 8 May 2018
A Bayesian approach to determine the composition of heterogeneous cancer tissue

Authors: Ashish Katiyar, Anwoy Mohanty, Jianping Hua, Sima Chao, Rosana Lopes, Aniruddha Datta and Michael L. Bittner

Citation: BMC Bioinformatics 2018 19(Suppl 3):90

Content type: Research Published on: 21 March 2018

This article is part of a Supplement: Volume 19 Supplement 3
Assessing microscope image focus quality with deep learning

Authors: Samuel J. Yang, Marc Berndl, D. Michael Ando, Mariya Barch, Arunachalam Narayanaswamy, Eric Christiansen, Stephan Hoyer, Chris Roat, Jane Hung, Curtis T. Rueden, Asim Shankar, Steven Finkbeiner and Philip Nelson

Citation: BMC Bioinformatics 2018 19:77

Content type: Software Published on: 15 March 2018
Host genetic variation and its microbiome interactions within the Human Microbiome Project

Authors: Raivo Kolde, Eric A. Franzosa, Gholamali Rahnavard, Andrew Brantley Hall, Hera Vlamakis, Christine Stevens, Mark J. Daly, Ramnik J. Xavier and Curtis Huttenhower

Citation: Genome Medicine 2018 10:6

Content type: Research Published on: 29 January 2018
Integrated Bayesian analysis of rare exonic variants to identify risk genes for schizophrenia and neurodevelopmental disorders

Authors: Hoang T. Nguyen, Julien Bryois, April Kim, Amanda Dobbyn, Laura M. Huckins, Ana B. Munoz-Manchado, Douglas M. Ruderfer, Giulio Genovese, Menachem Fromer, Xinyi Xu, Dalila Pinto, Sten Linnarsson, Matthijs Verhage, August B. Smit, Jens Hjerling-Leffler, Joseph D. Buxbaum…

Citation: Genome Medicine 2017 9:114

Content type: Research Published on: 20 December 2017
Synima: a Synteny imaging tool for annotated genome assemblies

Authors: Rhys A. Farrer

Citation: BMC Bioinformatics 2017 18:507

Content type: Software Published on: 21 November 2017
Identifying predictive features of Clostridium difficile infection recurrence before, during, and after primary antibiotic treatment

Authors: Sepideh Pakpour, Amit Bhanvadia, Roger Zhu, Abhimanyu Amarnani, Sean M. Gibbons, Thomas Gurry, Eric J. Alm and Laura A. Martello

Citation: Microbiome 2017 5:148

Content type: Research Published on: 13 November 2017
Actionable gene-based classification toward precision medicine in gastric cancer

Authors: Hiroshi Ichikawa, Masayuki Nagahashi, Yoshifumi Shimada, Takaaki Hanyu, Takashi Ishikawa, Hitoshi Kameyama, Takashi Kobayashi, Jun Sakata, Hiroshi Yabusaki, Satoru Nakagawa, Nobuaki Sato, Yuki Hirata, Yuko Kitagawa, Toshiyuki Tanahashi, Kazuhiro Yoshida, Ryota Nakanishi…

Citation: Genome Medicine 2017 9:93

Content type: Research Published on: 31 October 2017
Malaria prevalence, prevention and treatment seeking practices among nomadic pastoralists in northern Senegal

Authors: Mame Cheikh Seck, Julie Thwing, Fatou Ba Fall, Jules Francois Gomis, Awa Deme, Yaye Die Ndiaye, Rachel Daniels, Sarah K. Volkman, Medoune Ndiop, Mady Ba and Daouda Ndiaye

Citation: Malaria Journal 2017 16:413

Content type: Research Published on: 13 October 2017
Emergence and loss of spliceosomal twin introns

Authors: Michel Flipphi, Norbert Ág, Levente Karaffa, Napsugár Kavalecz, Gustavo Cerqueira, Claudio Scazzocchio and Erzsébet Fekete

Citation: Fungal Biology and Biotechnology 2017 4:7

Content type: Research Published on: 6 October 2017
Schrödinger’s microbes: Tools for distinguishing the living from the dead in microbial ecosystems

Authors: Joanne B. Emerson, Rachel I. Adams, Clarisse M. Betancourt Román, Brandon Brooks, David A. Coil, Katherine Dahlhausen, Holly H. Ganz, Erica M. Hartmann, Tiffany Hsu, Nicholas B. Justice, Ivan G. Paulino-Lima, Julia C. Luongo, Despoina S. Lymperopoulou, Cinta Gomez-Silvan, Brooke Rothschild-Mancinelli, Melike Balk…

Citation: Microbiome 2017 5:86

Content type: Review Published on: 16 August 2017
Cerebrospinal fluid kynurenine and kynurenic acid concentrations are associated with coma duration and long-term neurocognitive impairment in Ugandan children with cerebral malaria

Authors: Dag Holmberg, Elisabeth Franzén-Röhl, Richard Idro, Robert O. Opoka, Paul Bangirana, Carl M. Sellgren, Ronny Wickström, Anna Färnert, Lilly Schwieler, Göran Engberg and Chandy C. John

Citation: Malaria Journal 2017 16:303

Content type: Research Published on: 28 July 2017
Dissecting the role of non-coding RNAs in the accumulation of amyloid and tau neuropathologies in Alzheimer’s disease

Authors: Ellis Patrick, Sathyapriya Rajagopal, Hon-Kit Andus Wong, Cristin McCabe, Jishu Xu, Anna Tang, Selina H. Imboywa, Julie A. Schneider, Nathalie Pochet, Anna M. Krichevsky, Lori B. Chibnik, David A. Bennett and Philip L. De Jager

Citation: Molecular Neurodegeneration 2017 12:51

Content type: Research article Published on: 1 July 2017
Dissecting the human microbiome with single-cell genomics

Authors: Andrew C. Tolonen and Ramnik J. Xavier

Citation: Genome Medicine 2017 9:56

Content type: Comment Published on: 14 June 2017
High-throughput validation of ceRNA regulatory networks

Authors: Hua-Sheng Chiu, María Rodríguez Martínez, Mukesh Bansal, Aravind Subramanian, Todd R. Golub, Xuerui Yang, Pavel Sumazin and Andrea Califano

Citation: BMC Genomics 2017 18:418

Content type: Research article Published on: 30 May 2017
Artemisinin resistance without pfkelch13 mutations in Plasmodium falciparum isolates from Cambodia

Authors: Angana Mukherjee, Selina Bopp, Pamela Magistrado, Wesley Wong, Rachel Daniels, Allison Demas, Stephen Schaffner, Chanaki Amaratunga, Pharath Lim, Mehul Dhorda, Olivo Miotto, Charles Woodrow, Elizabeth A. Ashley, Arjen M. Dondorp, Nicholas J. White, Dyann Wirth…

Citation: Malaria Journal 2017 16:195

Content type: Research Published on: 12 May 2017
Growth and stress response mechanisms underlying post-feeding regenerative organ growth in the Burmese python

Authors: Audra L. Andrew, Blair W. Perry, Daren C. Card, Drew R. Schield, Robert P. Ruggiero, Suzanne E. McGaugh, Amit Choudhary, Stephen M. Secor and Todd A. Castoe

Citation: BMC Genomics 2017 18:338

Content type: Research article Published on: 2 May 2017
Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance

Authors: Gustavo C. Cerqueira, Ian H. Cheeseman, Steve F. Schaffner, Shalini Nair, Marina McDew-White, Aung Pyae Phyo, Elizabeth A. Ashley, Alexandre Melnikov, Peter Rogov, Bruce W. Birren, François Nosten, Timothy J. C. Anderson and Daniel E. Neafsey

Citation: Genome Biology 2017 18:78

Content type: Research Published on: 28 April 2017
Case report of Plasmodium ovale curtisi malaria in Sri Lanka: relevance for the maintenance of elimination status

Authors: Sharmini Gunawardena, Rachel F. Daniels, Thishan C. Yahathugoda, Mirani V. Weerasooriya, Katelyn Durfee, Sarah K. Volkman, Dyann F. Wirth and Nadira D. Karunaweera

Citation: BMC Infectious Diseases 2017 17:307

Content type: Case report Published on: 24 April 2017
High resolution melting: a useful field-deployable method to measure dhfr and dhps drug resistance in both highly and lowly endemic Plasmodium populations

Authors: Yaye Dié Ndiaye, Cyrille K. Diédhiou, Amy K. Bei, Baba Dieye, Aminata Mbaye, Nasserdine Papa Mze, Rachel F. Daniels, Ibrahima M. Ndiaye, Awa B. Déme, Amy Gaye, Mouhamad Sy, Tolla Ndiaye, Aida S. Badiane, Mouhamadou Ndiaye, Zul Premji, Dyann F. Wirth…

Citation: Malaria Journal 2017 16:153

Content type: Research Published on: 19 April 2017

Broad Institute of MIT & Harvard

Broad Institute of MIT & Harvard 's Articles

Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms

A Bayesian approach to determine the composition of heterogeneous cancer tissue

Assessing microscope image focus quality with deep learning

Host genetic variation and its microbiome interactions within the Human Microbiome Project

Integrated Bayesian analysis of rare exonic variants to identify risk genes for schizophrenia and neurodevelopmental disorders

Synima: a Synteny imaging tool for annotated genome assemblies

Identifying predictive features of Clostridium difficile infection recurrence before, during, and after primary antibiotic treatment

Actionable gene-based classification toward precision medicine in gastric cancer

Malaria prevalence, prevention and treatment seeking practices among nomadic pastoralists in northern Senegal

Emergence and loss of spliceosomal twin introns

Schrödinger’s microbes: Tools for distinguishing the living from the dead in microbial ecosystems

Cerebrospinal fluid kynurenine and kynurenic acid concentrations are associated with coma duration and long-term neurocognitive impairment in Ugandan children with cerebral malaria

Dissecting the role of non-coding RNAs in the accumulation of amyloid and tau neuropathologies in Alzheimer’s disease

Dissecting the human microbiome with single-cell genomics

High-throughput validation of ceRNA regulatory networks

Artemisinin resistance without pfkelch13 mutations in Plasmodium falciparum isolates from Cambodia

Growth and stress response mechanisms underlying post-feeding regenerative organ growth in the Burmese python

Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance

Case report of Plasmodium ovale curtisi malaria in Sri Lanka: relevance for the maintenance of elimination status

High resolution melting: a useful field-deployable method to measure dhfr and dhps drug resistance in both highly and lowly endemic Plasmodium populations