SUNY Upstate Medical University

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SUNY Upstate Medical University is Central New York's only academic medical center and consists of four colleges, Graduate Studies, Health Professions, Medicine and Nursing, a teaching hospital and a rapidly expanding biomedical research division.

SUNY Upstate Medical University's Articles

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Page 1 of 13

LungGENIE: the lung gene-expression and network imputation engine

Authors: Auyon J. Ghosh, Liam P. Coyne, Sanchit Panda, Aravind A. Menon, Matthew Moll, Michael A. Archer, Jason Wallen, Frank A. Middleton, Craig P. Hersh, Stephen J. Glatt and Jonathan L. Hess

Citation: BMC Genomics 2025 26:227

Content type: Software Published on: 10 March 2025
Factors impacting loneliness in patients with serious life-limiting illness in the Emergency Medicine Palliative Care Access (EMPallA) study

Authors: Brendan Maloney, Mara Flannery, Jason J. Bischof, Kaitlyn Van Allen, Oluwaseun Adeyemi, Keith S. Goldfeld, Allison M. Cuthel, Alex Chang and Corita R. Grudzen

Citation: BMC Palliative Care 2025 24:58

Content type: Research Published on: 8 March 2025
Structural variants linked to Alzheimer’s disease and other common age-related clinical and neuropathologic traits

Authors: Ricardo A. Vialle, Katia de Paiva Lopes, Yan Li, Bernard Ng, Julie A. Schneider, Aron S. Buchman, Yanling Wang, Jose M. Farfel, Lisa L. Barnes, Aliza P. Wingo, Thomas S. Wingo, Nicholas T. Seyfried, Philip L. De Jager, Chris Gaiteri, Shinya Tasaki and David A. Bennett

Citation: Genome Medicine 2025 17:20

Content type: Research Published on: 4 March 2025
Impact of cariprazine on body weight and blood pressure among adults with bipolar I disorder, schizophrenia, or major depressive disorder in a real-world setting

Authors: Christoph U. Correll, Andrew J. Cutler, François Laliberté, Guillaume Germain, Sean D. MacKnight, Julien Boudreau, Sally W. Wade, Nadia Nabulsi, Huy-Binh Nguyen and Mousam Parikh

Citation: Annals of General Psychiatry 2025 24:5

Content type: Research Published on: 27 January 2025
Reviewing manuscripts for scientific journals: recommendations for early career scientists

Authors: Diego A. Forero, Stephen J. Glatt and Marilyn H. Oermann

Citation: BMC Research Notes 2025 18:17

Content type: Comment Published on: 16 January 2025
Phosphorylation of Bok at Ser-8 blocks its ability to suppress IP₃R-mediated calcium mobilization

Authors: Caden G. Bonzerato, Katherine R. Keller and Richard J. H. Wojcikiewicz

Citation: Cell Communication and Signaling 2025 23:27

Content type: Research Published on: 14 January 2025
Computational deconvolution of cell type-specific gene expression in COPD and IPF lungs reveals disease severity associations

Authors: Min Hyung Ryu, Jeong H. Yun, Kangjin Kim, Michele Gentili, Auyon Ghosh, Frank Sciurba, Lucas Barwick, Andrew Limper, Gerard Criner, Kevin K. Brown, Robert Wise, Fernando J. Martinez, Kevin R. Flaherty, Michael H. Cho, Peter J. Castaldi, Dawn L. DeMeo…

Citation: BMC Genomics 2024 25:1192

Content type: Research Published on: 18 December 2024
Imbalanced specialty representation of USMLE and NBME test writers

Authors: Mary T. Mahoney, Lauren C. Linkowski, Michael D. Mix, Roger Wong, Austin J. Sim, Sarah E. Hoffe and Karna T. Sura

Citation: BMC Medical Education 2024 24:980

Content type: Research Published on: 9 September 2024
Internal validation of modified Mirels’ scoring system for pathologic femur fractures

Authors: Vishal S. Desai, Richard L. Amendola, Kenneth A. Mann and Timothy A. Damron

Citation: BMC Musculoskeletal Disorders 2024 25:719

Content type: Research Published on: 6 September 2024
Relationship between NLR and penile squamous cell carcinoma: a systematic review and meta-analysis

Authors: Saghar Babadi, Matin Moallem Shahri, Sima Foroughi Nematollahi, Arnav Barpujari, Alec Clark, Brandon Lucke-Wold, Shirin Sarejloo, Arshin Ghaedi, Aida Bazrgar and Shokoufeh Khanzadeh

Citation: BMC Urology 2024 24:194

Content type: Research Published on: 6 September 2024
Anomalous right coronary artery managed with bypass and proximal ligation

Authors: Harry Ramcharran and Ahmad Nazem

Citation: Journal of Cardiothoracic Surgery 2024 19:439

Content type: Case Report Published on: 13 July 2024
Low-dose overlap initiation with split tablets of buprenorphine in intubated intensive care unit patients with opioid use disorder

Authors: Laura Szczesniak, Sarah Britton, Theresa Baxter RN and Ross Sullivan

Citation: Harm Reduction Journal 2024 21:114

Content type: Methodology Published on: 7 June 2024
Commentary on 2022 guidelines on clinical trial design in cluster headache and further suggestions

Authors: Ioana Medrea, Stewart J. Tepper, Donliang Wang, Paul G. Mathew and Mark Burish

Citation: The Journal of Headache and Pain 2024 25:32

Content type: Methodology Published on: 7 March 2024
ADHD medicine consumption in Europe after COVID-19: catch-up or trend change?

Authors: Sophie Gimbach, Daniel Vogel, Roland Fried, Stephen V. Faraone, Tobias Banaschewski, Jan Buitelaar, Manfred Döpfner and Richard Ammer

Citation: BMC Psychiatry 2024 24:112

Content type: Research Published on: 9 February 2024
Time-Controlled Adaptive Ventilation (TCAV): a personalized strategy for lung protection

Authors: Hassan Al-Khalisy, Gary F. Nieman, Michaela Kollisch-Singule, Penny Andrews, Luigi Camporota, Joseph Shiber, Toni Manougian, Joshua Satalin, Sarah Blair, Auyon Ghosh, Jacob Herrmann, David W. Kaczka, Donald P. Gaver, Jason H. T. Bates and Nader M. Habashi

Citation: Respiratory Research 2024 25:37

Content type: Review Published on: 18 January 2024
Simulated cardiopulmonary bypass: a high fidelity model for developing and accessing clinical perfusion skills

Authors: Bruce E. Searles, Jeffrey B. Riley, Edward M. Darling and Jason R. Wiles

Citation: Advances in Simulation 2024 9:1

Content type: Innovation Published on: 2 January 2024
A multicenter evaluation of pediatric emergency department injury visits during the COVID-19 pandemic

Authors: Holly R. Hanson, Margaret Formica, Danielle Laraque-Arena, Mark R. Zonfrillo, Puja Desai, Joseph O. O’Neil, Purnima Unni, Estell Lenita Johnson, Patricia Cobb, Maneesha Agarwal, Kristen Beckworth, Stephanie Schroter, Stephen Strotmeyer, Katie A. Donnelly, Leah K. Middelberg, Amber M. Morse…

Citation: Injury Epidemiology 2023 10:66

Content type: Original Contribution Published on: 13 December 2023
Engaging East Harlem, New York youth in action gun violence prevention research and child rights: a preliminary study

Authors: Pallavi Malla, Nakesha Fray, Margaret K. Formica, Danielle Goldberg, Robert Marchesani, Patricia Hennessy, Moshay Ervine, Jacqueline G. Wallace, Elaine Larson, Pamela Wridt and Danielle Laraque-Arena

Citation: Injury Epidemiology 2023 10(Suppl 1):60

Content type: Research Published on: 21 November 2023

This article is part of a Supplement: Volume 10 Supplement 1
Robust, scalable, and informative clustering for diverse biological networks

Authors: Chris Gaiteri, David R. Connell, Faraz A. Sultan, Artemis Iatrou, Bernard Ng, Boleslaw K. Szymanski, Ada Zhang and Shinya Tasaki

Citation: Genome Biology 2023 24:228

Content type: Method Published on: 12 October 2023
Association between remnant cholesterol, metabolic syndrome, and cardiovascular disease: post hoc analysis of a prospective national cohort study

Authors: Junguo Jin, Xiangming Hu, Melissa Francois, Ping Zeng, Weimian Wang, Bingyan Yu, Yingling Zhou and Haojian Dong

Citation: European Journal of Medical Research 2023 28:420

Content type: Research Published on: 11 October 2023