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Data Mining in Biomedical informatics and Healthcare

Dr Hongfang Liu, Yuji Zhang, Prof Qian Zhu

  1. Named Entity Recognition (NER) is a fundamental task in processing biomedical text. Due to the limited availability of labeled data, researchers have investigated few-shot learning methods to tackle this chall...

    Authors: Di Zhao, Wenxuan Mu, Xiangxing Jia, Shuang Liu, Yonghe Chu, Jiana Meng and Hongfei Lin
    Citation: BioData Mining 2025 18:28
  2. Constructing a predictive model is challenging in imbalanced medical dataset (such as preeclampsia), particularly when employing ensemble machine learning algorithms.

    Authors: Yinyao Ma, Hanlin Lv, Yanhua Ma, Xiao Wang, Longting Lv, Xuxia Liang and Lei Wang
    Citation: BioData Mining 2025 18:25
  3. Cardiopulmonary Exercise Testing (CPET) provides detailed insights into athletes’ cardiovascular and pulmonary function, making it a valuable tool in assessing recovery and injury risks. However, traditional s...

    Authors: Arezoo Abasi, Ahmad Nazari, Azar Moezy and Seyed Ali Fatemi Aghda
    Citation: BioData Mining 2025 18:16
  4. Osteoporosis significantly increases the risk of vertebral fractures, particularly among postmenopausal women, decreasing their quality of life. These fractures, often undiagnosed, can lead to severe health co...

    Authors: Yi-Chou Chen, Hui-Chen Su, Shih-Ming Huang, Ching-Hsiao Yu, Jen-Huei Chang and Yi-Lin Chiu
    Citation: BioData Mining 2025 18:13
  5. This study employs a LSTM-FC neural networks to address the critical public health issue of child undernutrition in Ethiopia. By employing this method, the study aims classify children's nutritional status and...

    Authors: Getnet Bogale Begashaw, Temesgen Zewotir and Haile Mekonnen Fenta
    Citation: BioData Mining 2025 18:11
  6. The transformative feature of Artificial Intelligence (AI) is the massive capacity for interpreting and transforming unstructured data into a coherent and meaningful context. In general, the potential that AI ...

    Authors: Shilpa R. Thandla, Grace Q. Armstrong, Adil Menon, Aashna Shah, David L. Gueye, Clara Harb, Estefania Hernandez, Yasaswini Iyer, Abigail R. Hotchner, Riddhi Modi, Anusha Mudigonda, Maria A. Prokos, Tharun M. Rao, Olivia R. Thomas, Camilo A. Beltran, Taylor Guerrieri…
    Citation: BioData Mining 2024 17:58
  7. Regulatory T cells (Tregs) play a critical role in shaping the immunosuppressive microenvironment within tumors. Investigating the role of Tregs in Clear cell renal cell carcinoma (ccRCC) is crucial for identi...

    Authors: Yang Qixin, Huang Jing, He Jiang, Liu Xueyang, Yu Lu and Li Yuehua
    Citation: BioData Mining 2024 17:51
  8. Membranous nephropathy (MN) and IgA nephropathy (IgAN) pose challenges in clinical treatment with existing therapies primarily focusing on symptom relief and often yielding unsatisfactory outcomes. The search ...

    Authors: Xinyi Xu, Changhong Miao, Shirui Yang, Lu Xiao, Ying Gao, Fangying Wu and Jianbo Xu
    Citation: BioData Mining 2024 17:49
  9. Cutaneous melanoma is the most aggressive form of skin cancer, responsible for most skin cancer-related deaths. Recent advances in artificial intelligence, jointly with the availability of public dermoscopy im...

    Authors: Vanesa Gómez-Martínez, David Chushig-Muzo, Marit B. Veierød, Conceição Granja and Cristina Soguero-Ruiz
    Citation: BioData Mining 2024 17:46
  10. The high complexity of systemic autoimmune diseases (SADs) has hindered precise management. This study aims to investigate heterogeneity in SADs.

    Authors: Chia-Wei Chang, Hsin-Yao Wang, Wan-Ying Lin, Yu-Chiang Wang, Wei-Lin Lo, Ting-Wei Lin, Jia-Ruei Yu and Yi-Ju Tseng
    Citation: BioData Mining 2024 17:36
  11. Hospitalizations for exacerbations of congestive heart failure (CHF), chronic obstructive pulmonary disease (COPD) and diabetic ketoacidosis (DKA) are costly in the United States. The purpose of this study was...

    Authors: Monique Arnold, Lathan Liou and Mary Regina Boland
    Citation: BioData Mining 2024 17:35
  12. This study aims to develop an innovative approach for monitoring and assessing labor pain through ECG waveform analysis, utilizing machine learning techniques to monitor pain resulting from uterine contractions.

    Authors: Yuan-Chia Chu, Saint Shiou-Sheng Chen, Kuen-Bao Chen, Jui-Sheng Sun, Tzu-Kuei Shen and Li-Kuei Chen
    Citation: BioData Mining 2024 17:32
  13. Identifying critical genes is important for understanding the pathogenesis of complex diseases. Traditional studies typically comparing the change of biomecules between normal and disease samples or detecting ...

    Authors: Bolin Chen, Jinlei Zhang, Ci Shao, Jun Bian, Ruiming Kang and Xuequn Shang
    Citation: BioData Mining 2024 17:30
  14. Data imbalance is a pervasive issue in medical data mining, often leading to biased and unreliable predictive models. This study aims to address the urgent need for effective strategies to mitigate the impact ...

    Authors: Junliang Zhu, Shaowei Pu, Jiaji He, Dongchao Su, Weijie Cai, Xueying Xu and Hongbo Liu
    Citation: BioData Mining 2024 17:29
  15. Cardiovascular diseases are the main cause of death in the world and cardiovascular imaging techniques are the mainstay of noninvasive diagnosis. Aortic stenosis is a lethal cardiac disease preceded by aortic ...

    Authors: Luís B. Elvas, Sara Gomes, João C. Ferreira, Luís Brás Rosário and Tomás Brandão
    Citation: BioData Mining 2024 17:27
  16. The use of machine learning in medical diagnosis and treatment has grown significantly in recent years with the development of computer-aided diagnosis systems, often based on annotated medical radiology image...

    Authors: Mateja Napravnik, Franko Hržić, Sebastian Tschauner and Ivan Štajduhar
    Citation: BioData Mining 2024 17:22
  17. Recent researches have found a strong correlation between the triglyceride-glucose (TyG) index or the atherogenic index of plasma (AIP) and cardiovascular disease (CVD) risk. However, there is a lack of resear...

    Authors: Yuqi Zhang, Sijin Li, Weijie Wu, Yanqing Zhao, Jintao Han, Chao Tong, Niansang Luo and Kun Zhang
    Citation: BioData Mining 2024 17:12
  18. Previous studies have shown an association between gut microbiota and cardiovascular diseases (CVDs). However, the underlying causal relationship remains unclear. This study aims to elucidate the causal relati...

    Authors: Xiao-Ce Dai, Yi Yu, Si-Yu Zhou, Shuo Yu, Mei-Xiang Xiang and Hong Ma
    Citation: BioData Mining 2024 17:6
  19. Non-linear relationships at the genotype level are essential in understanding the genetic interactions of complex disease traits. Genome-wide association Studies (GWAS) have revealed statistical association of...

    Authors: Burcu Yaldız, Onur Erdoğan, Sevda Rafatov, Cem Iyigün and Yeşim Aydın Son
    Citation: BioData Mining 2024 17:3
  20. The elderly are disproportionately affected by age-related hearing loss (ARHL). Despite being a well-known tool for ARHL evaluation, the Hearing Handicap Inventory for the Elderly Screening version (HHIE-S) ha...

    Authors: Tzong-Hann Yang, Yu-Fu Chen, Yen-Fu Cheng, Jue-Ni Huang, Chuan-Song Wu and Yuan-Chia Chu
    Citation: BioData Mining 2023 16:35
  21. Patients with Type 2 Diabetes Mellitus (T2DM) are at a higher risk of polypharmacy and more susceptible to irrational prescriptions; therefore, pharmacological therapy patterns are important to be monitored. T...

    Authors: Elnaz Ziad, Somayeh Sadat, Farshad Farzadfar and Mohammad-Reza Malekpour
    Citation: BioData Mining 2023 16:29
  22. The incidence of gastric cardiac cancer (GCC) has obviously increased recently with poor prognosis. It’s necessary to compare GCC prognosis with other gastric sites carcinoma and set up an effective prognostic...

    Authors: Wei Li, Minghang Zhang, Siyu Cai, Liangliang Wu, Chao Li, Yuqi He, Guibin Yang, Jinghui Wang and Yuanming Pan
    Citation: BioData Mining 2023 16:21
  23. To facilitate the implementation of the Family Smoking Prevention and Tobacco Control Act of 2009, the Federal Drug Agency (FDA) Center for Tobacco Products (CTP) has identified research priorities under the u...

    Authors: Dingcheng Li, Janet Okamoto, Hongfang Liu and Scott Leischow
    Citation: BioData Mining 2015 8:11
  24. Pharmacogenomics (PGx) as an emerging field, is poised to change the way we practice medicine and deliver health care by customizing drug therapies on the basis of each patient’s genetic makeup. A large volume...

    Authors: Liwei Wang, Hongfang Liu, Christopher G Chute and Qian Zhu
    Citation: BioData Mining 2015 8:9