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First dive into marine genomics

Guest Editor:
Artem Nedoluzhko: European University at Saint Petersburg, Russia


New Content ItemViolent natural disasters that result in mass species extinctions are not uncommon in the history of our planet. Nowadays, the Earth stands in front of the era of global changes, this time caused by humans. The ocean has long taken the brunt of the impacts of climate change and has been influenced by the raise in temperature and the associated marine water acidification. These processes are gradually altering the ocean's unique landscapes and biodiversity. BMC Genomics welcomed submissions to our "First Dive into Marine Genomics" for early-career researchers Collection (marine biologists, marine ecologists, and evolutionary biologists) on their first step in understanding the world ocean's biodiversity and evolution during this era of great changes using molecular genetics, genomics, and bioinformatics methods. With this collection we would like to promote the sustainable development goal SDG14: Life Below Water.

Meet the Guest Editors

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Artem Nedoluzhko: European University at Saint Petersburg, Russia

Artem Nedoluzhko is the Head of the Paleogenomics laboratory at the European University at Saint Petersburg. He has extensive research experience in the area of evolutionary genomics of vertebrates (i.e., aquatic animals). He studied Biology at the Far Eastern Federal University (FEFU) and obtained his Ph.D. in Biotechnology from the Federal Research Center of Biotechnology of the Russian Academy of Science in 2008. His research is focused on the evolutionary genomics of vertebrates, including using museum and ancient DNA. Dr. Nedoluzhko is a member of the editorial board of BMC Genomics.

About the collection

The last century has seen a large and rapid expansion of human activities which in turn has been destroying ecosystems that had been developing for billions of years. Indeed, growing economic activities often lead to the extinction of species, the degradation of habitats, and the direct destruction of organic life. Human-made global warming is one of the key factors contributing to the sixth mass extinction of species. The ocean has long taken the brunt of the impacts of climate change and has been influenced by the raise in temperature and the associated marine water acidification. These processes are gradually altering the ocean's unique landscapes and biodiversity.

Marine life, from unicellular microorganisms to mammals, is struggling to adapt to new environments and change their distribution and ecological niches. Some of these species are going extinct, while others manage to find rescue and stay alive. Environmental changes and ecosystems destruction have a substantial effect on Earth. However, they also provide exciting opportunities to understand the origin and the evolution of life using elaborate modern methods for observations and outstanding data analysis capabilities.

BMC Genomics is calling for submissions to our "First Dive into Marine Genomics for early-career researchers Collection (marine biologists, marine ecologists, and evolutionary biologists) on their first step in understanding the world ocean's biodiversity during this era of substantial changes using molecular genetics, genomics, and bioinformatics methods. For this Collection, we invite you to contribute original research papers describing the application of modern methods for phylogenetic analyses, as well as speciation and molecular evolution studies of marine species in changing environments. Experimental studies demonstrating the importance of epigenetic factors (i.e., non-coding RNAs and RNA/DNA modifications) in adaptation to changing environments and research focused on describing the role of interspecific hybridization and its adaptive potential are also welcome. With this collection we would like to promote the sustainable development goal SDG14: Life Below Water.

N.B. As we understand the importance of the first steps for marine genomics, for this collection BMC Genomics would like to encourage manuscripts where the first author is an early-career researcher (BSc, MSc, or PhD student or scientist with no more than 5 years of research experience after the PhD). As per our policy, APC waivers are available for corresponding authors based in countries listed here:  apc waivers | Open research | Springer Nature.

Image credit: Anastasiia Samoukina

  1. Understanding the genetic basis of resilience in marine organisms is critical for conservation and management, particularly in the face of escalating environmental stress and disease outbreaks. The bay scallop Ar...

    Authors: Denis Grouzdev, Emmanuelle Pales Espinosa, Stephen Tettelbach, Arnaud Tanguy, Isabelle Boutet, Harrison Tobi and Bassem Allam
    Citation: BMC Genomics 2025 26:146
  2. Great Bay Estuary (GBE), within the rapidly warming Gulf of Maine, has experienced significant ecological shifts this century due to naturalization of invasive species. The range expansion of the American blue...

    Authors: Kelsey A. Meyer-Rust, Alyssa Strickland, Bo-Young Lee, Joseph L. Sevigny, Gabriela Bradt and Bonnie L. Brown
    Citation: BMC Genomics 2024 25:1238
  3. Eastern oysters, Crassostrea virginica, are historically a keystone species in many of the estuaries in which they reside, providing critical ecosystem services. Because oyster populations have been on the declin...

    Authors: Alyssa Strickland and Bonnie L. Brown
    Citation: BMC Genomics 2024 25:1171
  4. Echolocation was a key development in toothed whale evolution, enabling their adaptation and diversification across various environments. Previous bioacoustic and morphological studies suggest that environment...

    Authors: L. Magpali, E. Ramos, A. Picorelli, L. Freitas and M. F. Nery
    Citation: BMC Genomics 2024 25:1049
  5. Although metabarcoding and metagenomic approaches have generated large datasets on worldwide phytoplankton species diversity, the intraspecific genetic diversity underlying the genetic adaptation of marine phy...

    Authors: Martine Devic, Louis Dennu, Jean-Claude Lozano, Cédric Mariac, Valérie Vergé, Philippe Schatt, François-Yves Bouget and François Sabot
    Citation: BMC Genomics 2024 25:1045
  6. Anadara granosa, commonly known as the blood clam, exhibits the unusual characteristic of having red blood among invertebrates. There is significant individual variation in blood color intensity among blood clams...

    Authors: Xin He, Yushan Liao, Gaowei Yu, Shi Wang and Yongbo Bao
    Citation: BMC Genomics 2024 25:931
  7. Kelps are not only ecologically important, being primary producers and habitat forming species, they also hold substantial economic potential. Expansion of the kelp cultivation industry raises the interest for...

    Authors: Signe Bråtelund, Tom Ruttink, Franz Goecke, Ole Jacob Broch, Gunnar Klemetsdal, Jørgen Ødegård and Åshild Ergon
    Citation: BMC Genomics 2024 25:901
  8. Coral reefs experience frequent and severe disturbances that can overwhelm their natural resilience. In such cases, ecological restoration is essential for coral reef recovery. Sexual reproduction has been rep...

    Authors: Yanying Zhang, Ying Zhang, Xiaoyu Tang, Xiangrui Guo, Qingsong Yang, Hao Sun, Hanzhang Wang, Juan Ling and Junde Dong
    Citation: BMC Genomics 2024 25:840
  9. Macrobrachium nipponense is an important commercial freshwater species in China. However, the ability of alkali tolerance of M. nipponense is insufficient to culture in the major saline-alkali water source in Chi...

    Authors: Shubo Jin, Rong Zhou, Xuanbin Gao, Yiwei Xiong, Wenyi Zhang, Hui Qiao, Yan Wu, Sufei Jiang and Hongtuo Fu
    Citation: BMC Genomics 2024 25:765
  10. Cable bacteria are filamentous members of the Desulfobulbaceae family that are capable of performing centimetre‑scale electron transport in marine and freshwater sediments. This long‑distance electron transport i...

    Authors: Anwar Hiralal, Jeanine S. Geelhoed, Sinje Neukirchen and Filip J. R. Meysman
    Citation: BMC Genomics 2024 25:692
  11. The Atlantic cod is a prolific species in the Atlantic, despite its inconsistent specific antibody response. It presents a peculiar case within vertebrate immunology due to its distinct immune system, characte...

    Authors: Ádám Györkei, Finn-Eirik Johansen and Shuo-Wang Qiao
    Citation: BMC Genomics 2024 25:663
  12. Genome-wide comparisons of populations are widely used to explore the patterns of nucleotide diversity and sequence divergence to provide knowledge on how natural selection and genetic drift affect the genome....

    Authors: Fahime Mohamadnejad Sangdehi, Minal S. Jamsandekar, Erik D. Enbody, Mats E. Pettersson and Leif Andersson
    Citation: BMC Genomics 2024 25:459
  13. The common dolphin (Delphinus delphis) is widely distributed worldwide and well adapted to various habitats. Animal genomes store clues about their pasts, and can reveal the genes underlying their evolutionary su...

    Authors: Kui Ding, Qinzeng Xu, Liyuan Zhao, Yixuan Li, Zhong Li, Wenge Shi, Qianhui Zeng, Xianyan Wang and Xuelei Zhang
    Citation: BMC Genomics 2024 25:373

    The Correction to this article has been published in BMC Genomics 2024 25:499

  14. Cetaceans, having experienced prolonged adaptation to aquatic environments, have undergone evolutionary changes in their respiratory systems. This process of evolution has resulted in the emergence of distinct...

    Authors: Boxiong Guo, Yixuan Sun, Yuehua Wang, Ya Zhang, Yu Zheng, Shixia Xu, Guang Yang and Wenhua Ren
    Citation: BMC Genomics 2024 25:339
  15. Black flounder (Paralichthys orbignyanus, Pleuronectiformes) is a commercially significant marine fish with promising aquaculture potential in Argentina. Despite extensive studies on Black flounder aquaculture, i...

    Authors: Fernando Villarreal, Germán F. Burguener, Ezequiel J. Sosa, Nicolas Stocchi, Gustavo M. Somoza, Adrián G. Turjanski, Andrés Blanco, Jordi Viñas and Alejandro S. Mechaly
    Citation: BMC Genomics 2024 25:297
  16. The Peruvian ‘chanque’ or Chilean ‘loco’ Concholepas concholepas is an economically, ecologically, and culturally important muricid gastropod heavily exploited by artisanal fisheries in the temperate southeastern...

    Authors: J. Antonio Baeza, M. Teresa González, Julia D. Sigwart, Carola Greve and Stacy Pirro
    Citation: BMC Genomics 2024 25:77
  17. Reference genomes provide a foundational framework for evolutionary investigations, ecological analysis, and conservation science, yet uncertainties in the assembly of reference genomes are difficult to assess...

    Authors: Trevor T. Bringloe and Geneviève J. Parent
    Citation: BMC Genomics 2023 24:693
  18. Takifugu fasciatus is an aquaculture species with high economic value. In recent years, problems such as environmental pollution and inbreeding have caused a serious decline in T. fasciatus germplasm resources. I...

    Authors: Ying Zhang, Jie Li, Peng Chu, Ruhua Shang, Shaowu Yin and Tao Wang
    Citation: BMC Genomics 2023 24:645

Submission Guidelines

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This Collection welcomes submission of original Research Articles. Before submitting your manuscript, please ensure you have read our submission guidelines. Articles for this Collection should be submitted via our submission system, Snapp. During the submission process you will be asked whether you are submitting to a Collection, please select "First Dive into Marine Genomics" from the dropdown menu.

Articles will undergo the journal’s standard peer-review process and are subject to all of the journal’s standard policies. Articles will be added to the Collection as they are published.

The Editors have no competing interests with the submissions which they handle through the peer review process. The peer review of any submissions for which the Editors have competing interests is handled by another Editorial Board Member who has no competing interests.