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Single cell and spatial multiomics

Edited by:
Hua Zhang, PhD, Guangdong Medical University, China 

Submission Status: Closed

This Collection no longer accepts submissions.


Biomarker Research is calling for submissions to our Collection on 'Single cell and spatial multiomics.' 

This Collection aims to bring together cutting-edge research that harnesses single-cell and spatial multiomics techniques to dissect complex biological systems.

  1. Ligamentum flavum hypertrophy (LFH) is a primary contributor to lumbar spinal stenosis. However, a thorough understanding of the cellular and molecular mechanisms driving LFH fibrotic progression remains incom...

    Authors: Chengshuo Fei, Yanlin Chen, Ruiqian Tan, Xinxing Yang, Guanda Wu, Chenglong Li, Jiawei Shi, Shiyong Le, Wenjie Yang, Jiajia Xu, Liang Wang and Zhongmin Zhang
    Citation: Biomarker Research 2025 13:33
  2. Increasing scRNA-seq data in cardiovascular research have substantially improved our knowledge on the development of the cardiovascular system and the mechanisms underlying cardiovascular diseases. However, th...

    Authors: Tiantongfei Jiang, Xiaoyan Jin, Yueying Gao, Weiwei Zhou, Jinyang Yu, Yongsheng Li, Juan Xu and Benzhi Cai
    Citation: Biomarker Research 2024 12:149
  3. Metastatic prostate cancer is a highly heterogeneous and dynamic disease and practicable tools for patient stratification and resistance monitoring are urgently needed. Liquid biopsy analysis of circulating tu...

    Authors: Lilli Bonstingl, Margret Zinnegger, Katja Sallinger, Karin Pankratz, Christin-Therese Müller, Elisabeth Pritz, Corinna Odar, Christina Skofler, Christine Ulz, Lisa Oberauner-Wappis, Anatol Borrás-Cherrier, Višnja Somođi, Ellen Heitzer, Thomas Kroneis, Thomas Bauernhofer and Amin El-Heliebi
    Citation: Biomarker Research 2024 12:140

    The Correction to this article has been published in Biomarker Research 2024 12:150

  4. Exhaustion is a key factor that influences the efficacy of chimeric antigen receptor T (CAR-T) cells. Our previous study demonstrated that a bromodomain protein 4 (BRD4) inhibitor can revise the phenotype and ...

    Authors: Songnan Sui, Mengjun Zhong, Shuxin Zhong, Xueting Peng, Lipeng Mao, Cunte Chen, Chengwu Zeng, Oscar Junhong Luo and Yangqiu Li
    Citation: Biomarker Research 2024 12:124
  5. Aging of the male prostate is an inevitable process in which the prostate undergoes hyperplasia, and this growth may lead to compression of the urethra, resulting in voiding dysfunction and associated symptoms...

    Authors: Yang Li, Yuhong Ding, Yaxin Hou, Lilong Liu, Zhenghao Liu, Zhipeng Yao, Pengjie Shi, Jinxu Li, Ke Chen and Junyi Hu
    Citation: Biomarker Research 2024 12:117
  6. Latency remains a major obstacle to finding a cure for HIV despite the availability of antiretroviral therapy. Due to virus dormancy, limited biomarkers are available to identify latent HIV-infected cells. Pro...

    Authors: Guoxin Wu, Samuel H. Keller, Luca Sardo, Brian Magliaro, Paul Zuck, Carl J. Balibar, Claire Williams, Liuliu Pan, Mark Gregory, Kathy Ton, Jill Maxwell, Carol Cheney, Tom Rush and Bonnie J. Howell
    Citation: Biomarker Research 2024 12:116
  7. Glioma is the most common primary malignant tumor in the brain, and even with standard treatments including surgical resection, radiotherapy, and chemotherapy, the long-term survival rate of patients remains u...

    Authors: Houshi Xu, Huihui Chai, Ming Chen, Ruize Zhu, Shan Jiang, Xiaoyu Liu, Yue Wang, Jiawen Chen, Junji Wei, Ying Mao and Zhifeng Shi
    Citation: Biomarker Research 2024 12:114
  8. Novel neoadjuvant immunotherapy combined with chemotherapy (neoICT) has improved outcomes for patients with esophageal squamous-cell carcinoma (ESCC), but challenges persist in low response rates and therapy r...

    Authors: Jun Jiang, Chao Xu, Donghui Han, Yuan Lu, Fa Yang, Jiawei Wang, Xiaolong Yan, Xiaorong Mu, Jipeng Zhang, Chenghui Jia, Xinyao Xu, Kui Liu, Zhenhua Liu, Li Gong, Yi Wan and Qiang Lu
    Citation: Biomarker Research 2024 12:113
  9. Resistance to immunotherapy in bladder cancer has greatly limited its clinical application. Through single-cell sequencing, we determined that ACSM6, an oncogene that is highly expressed in bladder cancer, pro...

    Authors: Zhenyu Nie, Bolong Liu, Jinhui Liu, Xiongbing Zu, Juanhua Wang, Jinbo Chen, Benyi Fan and Dingshan Deng
    Citation: Biomarker Research 2024 12:112
  10. Cells, as the fundamental units of life, contain multidimensional spatiotemporal information. Single-cell RNA sequencing (scRNA-seq) is revolutionizing biomedical science by analyzing cellular state and interc...

    Authors: Xiangyu Wu, Xin Yang, Yunhan Dai, Zihan Zhao, Junmeng Zhu, Hongqian Guo and Rong Yang
    Citation: Biomarker Research 2024 12:110
  11. Podocalyxin-like protein (PODXL) is known to originate from tumor cells in several cancers; however, which cell type it is expressed in, whether and how it may contribute to tumor progression after radiotherap...

    Authors: Rui Huang, Fuhao Wang, Wenxue Zou, Xiaohui Li, Tianyu Lei, Peihang Li, Yajun Song, Chao Liu and Jinbo Yue
    Citation: Biomarker Research 2024 12:106
  12. Temporal lobe epilepsy (TLE) is among the most common types of epilepsy and often leads to cognitive, emotional, and psychiatric issues due to the frequent seizures. A notable pathological change related to TL...

    Authors: Quanlei Liu, Chunhao Shen, Yang Dai, Ting Tang, Changkai Hou, Hongyi Yang, Yihe Wang, Jinkun Xu, Yongchang Lu, Yunming Wang, Yongzhi Shan, Penghu Wei and Guoguang Zhao
    Citation: Biomarker Research 2024 12:103
  13. Multiple studies have shown that tumor-associated macrophages (TAMs) promote cancer initiation and progression. However, the reprogramming of macrophages in the tumor microenvironment (TME) and the cross-talk ...

    Authors: Zhao-Ru Dong, Meng-Ya Zhang, Ling-Xin Qu, Jie Zou, Yong-Heng Yang, Yun-Long Ma, Chun-Cheng Yang, Xue-Lei Cao, Li-Yuan Wang, Xiao-Lu Zhang and Tao Li
    Citation: Biomarker Research 2024 12:100
  14. High-grade serous ovarian cancer (HGSOC), which is known for its heterogeneity, high recurrence rate, and metastasis, is often diagnosed after being dispersed in several sites, with about 80% of patients exper...

    Authors: Hye-Yeon Ju, Seo Yeon Youn, Jun Kang, Min Yeop Whang, Youn Jin Choi and Mi-Ryung Han
    Citation: Biomarker Research 2024 12:80
  15. Cancer-associated fibroblasts (CAFs) are the major components of the tumor microenvironment and are related to tumor proliferation, metastasis, relapse, and drug resistance. With the development of sequencing ...

    Authors: Pin Lyu, Xiaoming Gu, Fuqi Wang, Haifeng Sun, Quanbo Zhou, Shuaixi Yang and Weitang Yuan
    Citation: Biomarker Research 2024 12:73
  16. Ischemic stroke (IS), a devastating cerebrovascular accident, presents with high mortality and morbidity. Following IS onset, a cascade of pathological changes, including excitotoxicity, inflammatory damage, a...

    Authors: Liangzhe Wei, Siqi Chen, Xinpeng Deng, Yuchun Liu, Haifeng Wang, Xiang Gao and Yi Huang
    Citation: Biomarker Research 2024 12:63
  17. Placenta accreta spectrum disorders (PAS) are a severe complication characterized by abnormal trophoblast invasion into the myometrium. The underlying mechanisms of PAS involve a complex interplay of various c...

    Authors: Kaiyuan Ji, Yunshan Chen, Xiuyu Pan, Lina Chen, Xiaodi Wang, Bolun Wen, Junjie Bao, Junmin Zhong, Zi Lv, Zheng Zheng and Huishu Liu
    Citation: Biomarker Research 2024 12:55
  18. Tumors exhibit metabolic heterogeneity, influencing cancer progression. However, understanding metabolic diversity in retinoblastoma (RB), the primary intraocular malignancy in children, remains limited.

    Authors: Junjie Tang, Yaoming Liu, Yinghao Wang, Zhihui Zhang, Jiahe Nie, Xinyue Wang, Siming Ai, Jinmiao Li, Yang Gao, Cheng Li, Chao Cheng, Shicai Su, Shuxia Chen, Ping Zhang and Rong Lu
    Citation: Biomarker Research 2024 12:48

About the collection

Biomarker Research is calling for submissions to our Collection on "Single cell and spatial multiomics."

This series welcome submissions related to the following important topics or elements:

1. Development of the framework for the joint analysis of single cell transcriptomics and spatial transcriptomics.

2. Development and application of innovative methods for single cell and spatial multiomics analysis.

3. Optimization of single cell transcriptome analysis process, such as dimensionality reduction and clustering analysis, subgroup identification, cell trajectory, intercellular communication and transcription regulation, and its application in life activities.

4. Joint analysis of spatial transcriptomics, protein omics and single cell omics.

5. Data analysis framework and technology development of single-cell omics and spatial omics based on deep learning.

6. Cell microenvironment analysis based on single cell omics and spatial omics.

Image credit: © Marius / stock.adobe.com / Generated with AI

Submission Guidelines

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This Collection welcomes submission of Research and Review Articles. 

Before submitting your manuscript, please ensure you have read our submission guidelines. Articles for this Collection should be submitted via our submission system. Please select the appropriate Collection title "Single cell and spatial multiomics" under the “Details” tab during the submission stage.

Articles will undergo the journal’s standard peer-review process and are subject to all of the journal’s standard policies. Articles will be added to the Collection as they are published.

The Editor has no competing interests with the submissions which the peer review process is handled. The peer review of any submissions for which the Editor has competing interests is handled by another Editorial Board Member who has no competing interests.